Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3632

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11999 and 12000 are separated by 382 nucleotides mRNA_3631: 11999 - Hypothetical Protein, at 206,956 to 207,306 11999 mRNA_3632: 12000 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 207,689 to 209,563 12000

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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206,856 - -0.7
207,039 - 11999 mRNA_3631 0.24 +0.8
207,315 + -0.5
207,605 + -1.1
207,606 - -1.8
208,208 - 12000 mRNA_3632 0.28 +1.1
208,229 - 12000 mRNA_3632 0.29 -0.8
208,607 - 12000 mRNA_3632 0.49 +0.3
208,923 + 12000 mRNA_3632 0.66 +0.3
209,061 - 12000 mRNA_3632 0.73 -0.4
209,514 + +0.1
209,634 + -0.7
209,634 - +0.6
209,650 - +0.6
209,753 - +0.5
209,777 + +0.2
209,935 - -0.4
209,952 - -1.5
209,953 + -0.5
209,973 + -1.4
210,092 - -3.1
210,261 + -0.1

Or see this region's nucleotide sequence