Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3639

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12007 and 12008 are separated by 784 nucleotides mRNA_3639: 12007 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 225,683 to 228,983 12007 mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229,768 to 230,624 12008

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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224,738 - -0.6
224,900 + +0.0
224,936 + -0.9
225,054 + +0.1
225,184 + -0.5
225,199 + -0.8
225,199 + -2.9
225,341 - -0.8
225,353 - -0.2
225,353 - -0.4
225,358 - +0.9
225,468 - +0.8
225,509 + +0.4
225,514 + -1.8
225,628 + -0.9
225,628 - -0.3
225,679 + +0.8
225,795 + +0.7
228,217 - 12007 mRNA_3639 0.77 +1.3
228,996 + -0.1
229,004 + -0.1
229,012 + -0.1
229,121 - +0.7
229,139 - +0.1
229,140 + +0.1
229,281 - -0.0
229,282 + +0.3
229,289 - -0.1
229,291 + +0.1
229,292 + +1.4
229,298 - +0.1
229,299 + +1.0
229,302 + -0.1
229,314 + -1.0
229,317 + -1.3
229,320 + +0.6
229,326 - -0.1
229,326 - -0.7
229,327 + -0.1
229,596 + +1.4
229,750 - +0.4
229,868 + 12008 mRNA_3640 0.12 +0.6
229,870 - 12008 mRNA_3640 0.12 -0.2
229,872 - 12008 mRNA_3640 0.12 +1.8

Or see this region's nucleotide sequence