Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3734

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12101 and 12102 are separated by 482 nucleotides12102 and 12103 are separated by 152 nucleotides mRNA_3733: 12101 - BLAST Hybrid signal transduction histidine kinase B [Leucoa..., at 457,405 to 460,471 12101 mRNA_3734: 12102 - Interpro Protein HRI1, at 460,954 to 461,748 12102 mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461,901 to 463,089 12103

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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460,006 - 12101 mRNA_3733 0.85 +1.3
460,010 - 12101 mRNA_3733 0.85 +0.4
460,047 - 12101 mRNA_3733 0.86 +0.8
460,141 + 12101 mRNA_3733 0.89 -1.0
460,142 - 12101 mRNA_3733 0.89 -0.1
460,150 + 12101 mRNA_3733 0.90 +1.1
460,152 - 12101 mRNA_3733 0.90 -0.9
460,158 - 12101 mRNA_3733 0.90 +0.9
460,163 - 12101 mRNA_3733 0.90 -1.3
460,170 + +0.8
460,171 - -1.6
460,175 - +0.0
460,190 + -0.1
460,198 + +1.6
460,320 - +0.0
460,321 - -0.4
460,326 - +0.2
460,331 + +0.6
460,342 + -1.0
460,348 - +0.0
460,352 + -0.0
460,373 - -1.0
460,474 - +0.4
460,514 - +0.1
460,518 - +0.6
460,519 + -1.2
460,525 + -1.5
460,532 + -0.0
460,542 - -0.3
460,544 + -0.0
460,556 + -0.4
460,562 - -0.9
460,564 - -0.0
460,569 + +0.0
460,599 + -0.9
460,606 - +0.5
460,611 - -0.4
460,612 - -0.0
460,618 + -0.1
460,631 - +0.7
460,631 + -0.1
460,636 + +0.2
460,636 - -0.0
460,643 - -0.5
460,648 - +1.0
460,652 - -0.2
460,661 - +1.0
460,675 + +0.1
460,681 + -0.3
460,824 + +0.2
460,901 - -0.2
461,224 - 12102 mRNA_3734 0.34 -0.2
461,243 - 12102 mRNA_3734 0.36 -0.0
461,513 - 12102 mRNA_3734 0.70 -0.6
461,523 + 12102 mRNA_3734 0.72 -0.9
461,562 + 12102 mRNA_3734 0.76 -0.7
461,992 + -0.5
461,996 + +0.3
462,113 - 12103 mRNA_3735 0.18 +1.3
462,143 - 12103 mRNA_3735 0.20 -0.9
462,282 + 12103 mRNA_3735 0.32 +1.5
462,566 + 12103 mRNA_3735 0.56 +0.0

Or see this region's nucleotide sequence