Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3781

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12149 and 12150 are separated by 353 nucleotides mRNA_3781: 12149 - K12821 PRPF40, PRP40 pre-mRNA-processing factor 40, at 565,558 to 568,249 12149 mRNA_3782: 12150 - K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B, at 568,603 to 571,218 12150

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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564,642 - +0.8
564,762 + -0.2
565,145 + -0.7
565,147 - +0.2
565,418 + +0.2
565,424 + +0.0
565,723 - -1.1
565,848 - 12149 mRNA_3781 0.11 -0.3
565,855 + 12149 mRNA_3781 0.11 -0.1
565,992 + 12149 mRNA_3781 0.16 -4.2
566,025 + 12149 mRNA_3781 0.17 -2.4
566,494 - 12149 mRNA_3781 0.35 +0.5
566,755 + 12149 mRNA_3781 0.44 -0.4
567,303 - 12149 mRNA_3781 0.65 -2.1
567,481 + 12149 mRNA_3781 0.71 -0.9
567,772 + 12149 mRNA_3781 0.82 -0.2
568,071 - +1.2
568,201 + +0.1
568,201 - +0.3
568,331 - -0.6
568,340 - -1.1
568,351 - -0.2
568,362 - -0.9
568,368 + +0.2
568,378 + -0.3
568,386 - -1.0
568,500 - +0.2

Or see this region's nucleotide sequence