Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3782

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12149 and 12150 are separated by 353 nucleotides12150 and 12151 are separated by 926 nucleotides mRNA_3781: 12149 - K12821 PRPF40, PRP40 pre-mRNA-processing factor 40, at 565,558 to 568,249 12149 mRNA_3782: 12150 - K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B, at 568,603 to 571,218 12150 mRNA_3783: 12151 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 572,145 to 573,439 12151

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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567,772 + 12149 mRNA_3781 0.82 -0.2
568,071 - +1.2
568,201 + +0.1
568,201 - +0.3
568,331 - -0.6
568,340 - -1.1
568,351 - -0.2
568,362 - -0.9
568,368 + +0.2
568,378 + -0.3
568,386 - -1.0
568,500 - +0.2
571,481 + -0.2
572,041 - -1.1
572,053 - -0.6
572,060 + +1.0

Or see this region's nucleotide sequence