Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3789

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12156 and 12157 are separated by 290 nucleotides12157 and 12158 are separated by 537 nucleotides mRNA_3788: 12156 - Hypothetical Protein, at 583,211 to 584,056 12156 mRNA_3789: 12157 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 584,347 to 585,517 12157 mRNA_3790: 12158 - K07151 STT3 dolichyl-diphosphooligosaccharide--protein glycosyltransferase, at 586,055 to 588,728 12158

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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583,371 - 12156 mRNA_3788 0.19 +0.8
583,409 + 12156 mRNA_3788 0.23 +0.4
583,409 - 12156 mRNA_3788 0.23 +0.3
583,415 - 12156 mRNA_3788 0.24 -0.4
583,430 + 12156 mRNA_3788 0.26 -0.6
583,713 - 12156 mRNA_3788 0.59 +0.3
584,317 - +0.3
584,921 + 12157 mRNA_3789 0.49 +0.5
585,229 + 12157 mRNA_3789 0.75 +0.6
585,317 + 12157 mRNA_3789 0.83 -1.0
585,484 - +0.4
585,490 + -0.1
585,491 - +0.3
585,493 - -0.3
585,498 - +0.2
585,614 + -0.3
585,617 - +1.6
585,620 - +0.3
585,621 - +0.3
585,644 + +1.5
585,655 + -1.0
585,658 + -0.4
585,777 - -0.3
585,937 + -0.2

Or see this region's nucleotide sequence