Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3806

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12173 and 12174 are separated by 140 nucleotides12174 and 12175 are separated by 394 nucleotides mRNA_3805: 12173 - Hypothetical Protein, at 617,336 to 618,142 12173 mRNA_3806: 12174 - K02365 ESP1 separase, at 618,283 to 626,082 12174 mRNA_3807: 12175 - HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616, at 626,477 to 629,699 12175

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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626,137 + +0.9
626,141 + +0.2
626,161 + -0.1
626,282 - +0.1
626,295 + -1.0
626,296 - +0.9
626,431 - +0.3
626,440 - +1.7
626,446 + +0.2
626,452 - +0.1
626,553 - +0.7
626,615 - +1.2
626,731 + +1.8
626,740 - +1.5
626,744 - +0.9
626,767 - +1.7
626,808 + 12175 mRNA_3807 0.10 +1.6
626,936 - 12175 mRNA_3807 0.14 -1.6

Or see this region's nucleotide sequence