Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3841

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12208 and 12209 are separated by 262 nucleotides12209 and 12210 are separated by 260 nucleotides12210 and 12211 are separated by 156 nucleotides mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714,373 to 715,825 12208 mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591 12209 mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213 12211

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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715,501 + 12208 mRNA_3840 0.78 -0.6
715,760 + -0.6
715,913 + +0.4
715,918 + -0.8
716,620 - 12209 mRNA_3841 0.21 -0.5
716,780 + 12209 mRNA_3841 0.28 -0.9
717,337 - 12209 mRNA_3841 0.50 +0.8
717,787 + 12209 mRNA_3841 0.68 -2.9
717,792 - 12209 mRNA_3841 0.68 -1.1
718,086 - 12209 mRNA_3841 0.80 -0.6
718,092 - 12209 mRNA_3841 0.80 -0.6
718,527 - -2.1
718,789 - +0.3
718,822 + -0.1
718,847 + -0.4
718,929 + 12210 mRNA_3842 0.15 -0.2
718,962 - 12210 mRNA_3842 0.22 -0.8
718,970 + 12210 mRNA_3842 0.23 +0.1
718,998 - 12210 mRNA_3842 0.29 -1.7
719,110 - 12210 mRNA_3842 0.51 -1.3
719,119 + 12210 mRNA_3842 0.53 -0.7
719,136 + 12210 mRNA_3842 0.56 -1.0
719,272 - 12210 mRNA_3842 0.83 -0.2
719,318 + -0.1
719,396 - -0.4
719,569 - +0.0
719,590 - +0.0

Or see this region's nucleotide sequence