Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3865

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3865: 12233 - HMMPfam-DASH complex subunit Spc34-PF08657, at 777,036 to 778,951 12233

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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776,373 - +2.4
776,526 + +1.0
776,547 + -0.8
776,648 - -0.8
776,653 - +0.7
776,657 - -0.2
776,660 - -0.1
776,677 + +0.2
776,683 + -0.2
778,139 + 12233 mRNA_3865 0.58 +1.8
778,698 - 12233 mRNA_3865 0.87 +0.1
779,002 - -0.1
779,009 - -0.7
779,012 - -0.2
779,020 + +0.2
779,025 - +0.6
779,029 - +0.1
779,030 - +0.2
779,038 + +0.0
779,039 - +0.5
779,048 + -0.4
779,109 - +1.3
779,120 + -0.5
779,121 + -0.3
779,136 + -0.4
779,172 + +2.4
779,401 - +0.4
779,430 - +0.6
779,438 - -0.0
779,554 + -1.1
779,581 + -1.0
779,597 + +0.6

Or see this region's nucleotide sequence