Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3880

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12247 and 12248 are separated by 566 nucleotides12248 and 12249 are separated by 379 nucleotides mRNA_3879: 12247 - Interpro Selenoprotein SelK_SelG, at 811,174 to 811,650 12247 mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812,217 to 813,988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814,368 to 814,862 12249

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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811,271 + 12247 mRNA_3879 0.20 -1.1
811,297 - 12247 mRNA_3879 0.26 +1.3
811,303 - 12247 mRNA_3879 0.27 +0.9
811,593 - 12247 mRNA_3879 0.88 -0.1
811,603 - -0.2
811,625 + -1.5
812,620 + 12248 mRNA_3880 0.23 -0.9
812,764 + 12248 mRNA_3880 0.31 +0.2
812,788 + 12248 mRNA_3880 0.32 -0.7
813,371 - 12248 mRNA_3880 0.65 -1.5
813,668 + 12248 mRNA_3880 0.82 -2.7
813,906 - -0.4
813,937 + +0.5
814,071 + +0.2
814,073 + -0.1
814,079 - +0.2
814,086 - +0.2
814,086 - -1.7
814,093 - +1.3
814,094 + -0.6
814,095 + -0.8
814,098 - +0.2
814,110 - +1.4
814,113 + +0.4
814,119 - -0.3
814,121 + -0.2
814,128 + +0.0
814,137 - +0.5
814,138 - -0.7
814,144 + -1.7
814,152 - +0.2
814,154 - -0.6
814,162 + +0.1
814,162 - +0.2
814,171 - -0.2
814,189 - -0.4
814,197 + -0.8
814,304 + -0.9
814,305 - -0.6
814,316 + +0.4
814,317 - -0.6
814,320 - -1.3
814,333 + +0.2
814,334 + +0.3
814,356 + +0.4
814,386 - +0.2
814,398 - -0.2
814,402 - -0.1
814,405 + +0.9
814,421 - 12249 mRNA_3881 0.11 -0.0
814,422 + 12249 mRNA_3881 0.11 -1.8
814,472 - 12249 mRNA_3881 0.21 -1.0
814,477 + 12249 mRNA_3881 0.22 -1.0
814,478 - 12249 mRNA_3881 0.22 -0.5
814,492 - 12249 mRNA_3881 0.25 -1.0
814,492 + 12249 mRNA_3881 0.25 -1.0
814,499 + 12249 mRNA_3881 0.26 +0.1
814,506 - 12249 mRNA_3881 0.28 -0.1
814,529 - 12249 mRNA_3881 0.33 +0.0
814,539 + 12249 mRNA_3881 0.35 -0.3
814,582 - 12249 mRNA_3881 0.43 +0.8
814,651 - 12249 mRNA_3881 0.57 +0.6
814,799 - 12249 mRNA_3881 0.87 +0.8
814,806 - 12249 mRNA_3881 0.88 +1.2
814,806 - 12249 mRNA_3881 0.88 +0.3
814,942 + +0.5
814,943 - +0.3
814,951 - -0.1
814,973 + -0.5

Or see this region's nucleotide sequence