Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3900

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12267 and 12268 are separated by 177 nucleotides12268 and 12269 are separated by 587 nucleotides mRNA_3899: 12267 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849,422 to 850,420 12267 mRNA_3900: 12268 - SUPERFAMILY--SSF55729, at 850,598 to 851,508 12268 mRNA_3901: 12269 - K00863 DAK, TKFC triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing), at 852,096 to 854,470 12269

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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849,792 - 12267 mRNA_3899 0.37 -0.3
850,417 + +0.1
850,477 + +1.5
850,718 + 12268 mRNA_3900 0.13 -0.4
851,030 + 12268 mRNA_3900 0.47 +0.1
851,382 + 12268 mRNA_3900 0.86 -1.2
851,620 - +1.0
851,865 + +0.3
851,873 - -0.9
851,927 - +0.0
852,069 + -0.5
852,171 - -2.1

Or see this region's nucleotide sequence