Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3921

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12289 and 12290 are separated by 442 nucleotides mRNA_3921: 12289 - Hypothetical Protein, at 910,029 to 911,741 12289 mRNA_3922: 12290 - K11099 SNRPG, SMG small nuclear ribonucleoprotein G, at 912,184 to 912,720 12290

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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909,062 + +0.2
909,070 - +0.2
909,078 - -0.0
909,080 - -0.0
909,141 + -0.3
909,237 - +0.6
909,367 + -1.5
909,390 - +0.0
909,407 + -0.9
909,507 + +0.6
909,519 - +0.0
909,519 - -0.1
909,560 + -0.5
909,657 + -2.7
909,820 - -0.6
909,994 + +0.5
910,840 - 12289 mRNA_3921 0.47 +0.1
911,122 - 12289 mRNA_3921 0.64 +1.2
911,139 + 12289 mRNA_3921 0.65 +0.3
911,145 + 12289 mRNA_3921 0.65 -0.2
911,803 + -0.6
911,979 + -1.1
911,984 - -0.0
911,987 + -0.2
912,009 + -0.2
912,110 + +1.1
912,116 - +0.2
912,119 - -1.1
912,123 - +0.5
912,125 - -0.3
912,126 - +0.3
912,145 - +0.4
912,149 - -0.3

Or see this region's nucleotide sequence