Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3947

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12314 and 12315 are separated by 123 nucleotides12315 and 12316 are separated by 119 nucleotides mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967,876 to 970,743 12314 mRNA_3947: 12315 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 970,867 to 972,281 12315 mRNA_3948: 12316 - Hypothetical Protein, at 972,401 to 974,517 12316

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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970,443 - 12314 mRNA_3946 0.90 -2.2
970,448 + 12314 mRNA_3946 0.90 -0.2
970,456 - 12314 mRNA_3946 0.90 +1.2
970,596 + -1.8
970,727 + +0.1
970,730 - -0.2
970,740 + -1.9
970,740 - -0.7
970,744 + -1.9
970,784 + -0.1
970,790 + -0.0
970,791 - +0.3
970,795 - -1.2
970,799 - +0.1
970,817 + -0.8
970,818 - +0.0
970,825 + +1.1
970,914 - +0.6
970,947 + +0.3
971,098 - 12315 mRNA_3947 0.16 -0.0
971,104 - 12315 mRNA_3947 0.17 +0.4
971,104 - 12315 mRNA_3947 0.17 -1.1
971,121 + 12315 mRNA_3947 0.18 +0.8
971,250 - 12315 mRNA_3947 0.27 -0.4
971,667 - 12315 mRNA_3947 0.57 -0.8
971,677 + 12315 mRNA_3947 0.57 -1.0
972,120 + 12315 mRNA_3947 0.89 +0.4
972,262 + -0.3
972,457 + -0.9
972,651 - 12316 mRNA_3948 0.12 +2.3

Or see this region's nucleotide sequence