Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4036

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12403 and 12404 are separated by 140 nucleotides12404 and 12405 are separated by 212 nucleotides mRNA_4035: 12403 - Hypothetical Protein, at 1,207,830 to 1,209,196 12403 mRNA_4036: 12404 - Hypothetical Protein, at 1,209,337 to 1,209,939 12404 mRNA_4037: 12405 - K12232 HECTD2 E3 ubiquitin-protein ligase HECTD2, at 1,210,152 to 1,214,937 12405

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,209,252 + -0.6
1,209,272 + +0.7
1,209,406 - 12404 mRNA_4036 0.11 +0.3
1,209,539 - 12404 mRNA_4036 0.33 -2.5
1,209,695 - 12404 mRNA_4036 0.59 -2.3
1,209,806 - 12404 mRNA_4036 0.78 +0.1
1,209,846 + 12404 mRNA_4036 0.84 +0.7
1,209,967 - +0.5
1,210,131 - -0.0
1,210,257 + -1.4
1,210,426 - +1.2

Or see this region's nucleotide sequence