Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4054

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12421 and 12422 are separated by 163 nucleotides12422 and 12423 are separated by 108 nucleotides12423 and 12424 are separated by 211 nucleotides mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1,245,651 to 1,248,069 12421 mRNA_4054: 12422 - KOG2973 Uncharacterized conserved protein, at 1,248,233 to 1,250,054 12422 mRNA_4055: 12423 - HMMPfam-Glyoxalase-like domain-PF12681,SUPERFAMILY--SSF54593, at 1,250,163 to 1,250,733 12423 mRNA_4056: 12424 - BLAST tRNA(His) guanylyltransferase [Kwoniella heveanensis ..., at 1,250,945 to 1,252,332 12424

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
1,248,143 - -1.2
1,248,152 + +1.5
1,248,152 + +0.4
1,248,153 - +2.2
1,248,157 - +0.2
1,248,164 + +0.2
1,248,171 - -0.7
1,248,171 + +0.5
1,248,190 + +0.7
1,248,279 - -0.5
1,248,342 + -2.2
1,248,445 + 12422 mRNA_4054 0.12 -0.6
1,248,631 + 12422 mRNA_4054 0.22 -0.1
1,250,276 + 12423 mRNA_4055 0.20 -0.0
1,250,320 - 12423 mRNA_4055 0.27 -0.5
1,250,594 - 12423 mRNA_4055 0.75 +0.0
1,250,622 + 12423 mRNA_4055 0.80 +0.1
1,250,623 - 12423 mRNA_4055 0.81 -0.2
1,250,623 - 12423 mRNA_4055 0.81 +0.4
1,250,895 - -0.6
1,250,898 - +0.2
1,250,898 + -2.5
1,251,039 - -0.5
1,251,047 - +0.5
1,251,054 + -0.0

Or see this region's nucleotide sequence