Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4071

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12438 and 12439 are separated by 707 nucleotides12439 and 12440 are separated by 683 nucleotides mRNA_4070: 12438 - K02877 RP-L15e, RPL15 large subunit ribosomal protein L15e, at 1,283,511 to 1,284,371 12438 mRNA_4071: 12439 - BLAST putative upf0132 domain-containing protein [Diaporthe..., at 1,285,079 to 1,285,837 12439 mRNA_4072: 12440 - K16575 ACTR1, ARP1 centractin, at 1,286,521 to 1,288,236 12440

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,284,785 + +0.3
1,284,785 + +2.8
1,284,796 + +0.5
1,284,995 - +0.3
1,284,999 + +0.6
1,285,112 - -1.4
1,285,300 + 12439 mRNA_4071 0.29 +0.3
1,285,427 - 12439 mRNA_4071 0.46 -0.1
1,285,440 - 12439 mRNA_4071 0.48 -0.3
1,285,584 - 12439 mRNA_4071 0.67 -0.8
1,285,868 - +0.2
1,285,876 - -0.3
1,286,147 - -0.2
1,286,148 - +0.4
1,286,154 + +0.2
1,286,161 - -0.5

Or see this region's nucleotide sequence