Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4101

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12468 and 12469 are separated by 53 nucleotides12469 and 12470 are separated by 111 nucleotides mRNA_4100: 12468 - K01253 EPHX1 microsomal epoxide hydrolase, at 1,360,647 to 1,362,471 12468 mRNA_4101: 12469 - Hypothetical Protein, at 1,362,525 to 1,362,683 12469 mRNA_4102: 12470 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1,362,795 to 1,364,929 12470

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,361,573 + 12468 mRNA_4100 0.51 -0.2
1,361,603 + 12468 mRNA_4100 0.52 +0.4
1,361,708 + 12468 mRNA_4100 0.58 +0.6
1,362,164 - 12468 mRNA_4100 0.83 -0.3
1,362,452 + +1.1
1,362,453 + -0.2
1,362,470 + +0.3
1,362,607 - 12469 mRNA_4101 0.52 +1.0
1,362,613 - 12469 mRNA_4101 0.55 +0.9
1,362,623 + 12469 mRNA_4101 0.62 +1.0
1,362,728 - +0.0
1,362,738 - +0.5
1,362,750 - +0.4
1,362,750 + +0.0
1,362,759 - -0.7
1,362,762 + -0.6
1,362,769 - -2.0
1,362,773 + -1.6

Or see this region's nucleotide sequence