Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4113

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12480 and 12481 are separated by 686 nucleotides mRNA_4112: 12480 - HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448, at 1,378,043 to 1,379,698 12480 mRNA_4113: 12481 - K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e, at 1,380,385 to 1,381,859 12481

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,379,579 - +0.7
1,379,588 + -0.1
1,379,750 - -0.3
1,379,872 - +1.5
1,379,881 + +0.5
1,379,886 - -0.4
1,380,046 + +0.3
1,380,174 - +0.9
1,380,183 + -0.2
1,380,307 - +0.1
1,380,326 - -0.2
1,380,327 + +0.5
1,380,343 - +0.3
1,380,347 - +0.3
1,381,977 - +1.5
1,382,068 - -1.6
1,382,141 - +0.2
1,382,148 + +1.5
1,382,150 - -0.4
1,382,211 - -0.4
1,382,213 + -0.2
1,382,227 - -0.3
1,382,240 + -0.6
1,382,285 + +0.0
1,382,290 - -0.4
1,382,316 + -0.4
1,382,352 - +0.5
1,382,362 - +0.5
1,382,366 - -0.4
1,382,410 - +0.3
1,382,445 - -0.1
1,382,477 + -0.2
1,382,480 - +0.1
1,382,494 + -1.1
1,382,505 - -0.0
1,382,517 - -0.0
1,382,525 + +0.4
1,382,534 + +0.5
1,382,535 + -1.4
1,382,541 + -0.6
1,382,556 - +1.0
1,382,568 + +0.8
1,382,574 + -0.2
1,382,585 + +0.3
1,382,593 - +0.8
1,382,602 + +0.7
1,382,629 + -0.9
1,382,643 - -0.0
1,382,650 + -1.6
1,382,654 - +0.4
1,382,666 + -0.2
1,382,666 + +0.2
1,382,668 + -0.2
1,382,679 + -0.2
1,382,685 + -0.9
1,382,687 + -1.0
1,382,689 - -0.1
1,382,692 - +1.3
1,382,696 - -1.0
1,382,702 + -0.9
1,382,704 + +1.0
1,382,708 - -0.8
1,382,710 - +1.1
1,382,715 - -0.3
1,382,717 - +0.6
1,382,718 + -3.1
1,382,722 + -0.3
1,382,724 - -0.7
1,382,725 + +0.7
1,382,729 + -0.5
1,382,729 + -0.4
1,382,733 + -1.4
1,382,746 - -0.2
1,382,799 + +0.7

Or see this region's nucleotide sequence