Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4118

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12485 and 12486 are separated by 193 nucleotides12486 and 12487 are separated by 788 nucleotides mRNA_4117: 12485 - K15728 LPIN phosphatidate phosphatase LPIN, at 1,388,981 to 1,392,980 12485 mRNA_4118: 12486 - Hypothetical Protein, at 1,393,174 to 1,394,335 12486 mRNA_4119: 12487 - KOG0118 FOG RRM domain, at 1,395,124 to 1,396,771 12487

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,392,679 - -0.1
1,392,994 - +1.4
1,393,142 + +0.6
1,393,155 + -0.6
1,393,295 - 12486 mRNA_4118 0.10 +0.5
1,393,299 - 12486 mRNA_4118 0.11 -1.8
1,393,417 - 12486 mRNA_4118 0.21 +0.5
1,393,430 + 12486 mRNA_4118 0.22 +0.6
1,394,037 + 12486 mRNA_4118 0.74 +0.2
1,394,330 - +0.1
1,394,479 + +0.1
1,394,499 - -0.2
1,394,585 + -0.1
1,394,646 - +0.3
1,394,743 - +0.7
1,394,764 - +0.7
1,394,797 - -0.5
1,395,018 + -0.4
1,395,063 - -1.0
1,395,122 - -0.1
1,395,245 - -0.6

Or see this region's nucleotide sequence