Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4179

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12546 and 12547 are separated by 721 nucleotides12547 and 12548 are separated by 259 nucleotides mRNA_4178: 12546 - KOG1337 N-methyltransferase, at 1,545,010 to 1,546,616 12546 mRNA_4179: 12547 - KOG0429 Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death, at 1,547,338 to 1,548,132 12547 mRNA_4180: 12548 - K03260 EIF4G translation initiation factor 4G, at 1,548,392 to 1,550,884 12548

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,546,505 - +0.0
1,546,893 - -0.6
1,547,249 + -0.2
1,547,365 - -1.2
1,547,536 + 12547 mRNA_4179 0.25 -0.6
1,547,537 + 12547 mRNA_4179 0.25 +0.9
1,547,554 - 12547 mRNA_4179 0.27 -0.5
1,548,134 - -0.5
1,548,166 + -0.9
1,548,253 + -0.2
1,548,293 + +0.3

Or see this region's nucleotide sequence