Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4186

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12553 and 12554 are separated by 558 nucleotides12554 and 12555 are separated by 334 nucleotides mRNA_4185: 12553 - KOG1212 Amidases, at 1,562,094 to 1,563,941 12553 mRNA_4186: 12554 - KOG2806 Chitinase, at 1,564,500 to 1,566,078 12554 mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1,566,413 to 1,568,898 12555

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,563,556 + 12553 mRNA_4185 0.79 -0.9
1,563,597 + 12553 mRNA_4185 0.81 -1.0
1,563,597 + 12553 mRNA_4185 0.81 +0.2
1,564,360 + +1.7
1,564,386 - -1.0
1,564,544 - +0.0
1,564,547 + -0.3
1,564,549 - -0.1
1,564,675 - 12554 mRNA_4186 0.11 +0.7
1,564,689 - 12554 mRNA_4186 0.12 -0.5
1,564,817 + 12554 mRNA_4186 0.20 -1.1
1,564,834 + 12554 mRNA_4186 0.21 -2.5
1,566,122 - -0.5
1,566,145 - -0.3
1,566,567 + -0.3
1,566,655 - -2.2
1,566,724 - 12555 mRNA_4187 0.13 -1.1
1,566,865 - 12555 mRNA_4187 0.18 -1.4

Or see this region's nucleotide sequence