Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4268

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12635 and 12636 are separated by 883 nucleotides12636 and 12637 are separated by 989 nucleotides mRNA_4267: 12635 - K01581 E4.1.1.17, ODC1, speC, speF ornithine decarboxylase, at 1,750,251 to 1,751,902 12635 mRNA_4268: 12636 - K02921 RP-L37Ae, RPL37A large subunit ribosomal protein L37Ae, at 1,752,786 to 1,753,388 12636 mRNA_4269: 12637 - K15634 gpmB probable phosphoglycerate mutase, at 1,754,378 to 1,755,256 12637

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,752,006 + -0.0
1,752,021 + -2.7
1,752,134 + -0.0
1,752,148 + -1.2
1,752,316 + +0.5
1,752,319 + +1.4
1,752,325 + -0.6
1,752,436 - +1.1
1,752,476 + +0.7
1,752,589 - -0.6
1,752,611 - -0.3
1,752,623 - +0.4
1,752,626 + -0.6
1,752,676 + -0.3
1,752,711 + +1.6
1,752,735 - +1.5
1,752,767 + +0.6
1,753,829 + +0.8
1,753,840 + +0.3
1,754,102 + -0.1
1,754,109 + +0.6
1,754,121 + -0.9
1,754,233 + +0.2
1,754,240 - -0.8
1,754,245 - +0.1
1,754,245 + -1.3
1,754,247 - -0.3
1,754,250 + +0.3
1,754,385 + -0.2

Or see this region's nucleotide sequence