Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4334

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12701 and 12702 are separated by 322 nucleotides12702 and 12703 are separated by 202 nucleotides mRNA_4333: 12701 - Hypothetical Protein, at 1,930,244 to 1,931,329 12701 mRNA_4334: 12702 - K10534 NR nitrate reductase (NAD(P)H), at 1,931,652 to 1,934,999 12702 mRNA_4335: 12703 - K12620 LSM1 U6 snRNA-associated Sm-like protein LSm1, at 1,935,202 to 1,935,968 12703

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,930,966 - 12701 mRNA_4333 0.66 +0.2
1,930,972 - 12701 mRNA_4333 0.67 -0.2
1,930,976 + 12701 mRNA_4333 0.67 +0.3
1,930,980 + 12701 mRNA_4333 0.68 +0.9
1,930,989 + 12701 mRNA_4333 0.69 -0.3
1,931,115 - 12701 mRNA_4333 0.80 -0.4
1,931,122 - 12701 mRNA_4333 0.81 +0.6
1,931,134 - 12701 mRNA_4333 0.82 +0.3
1,931,269 + +0.2
1,931,418 - -0.3
1,931,421 - +0.1
1,931,425 + +0.2
1,931,439 - -0.3
1,931,443 + -0.5
1,931,563 - -0.6
1,931,586 + -0.2
1,931,587 + -1.4
1,931,704 - -1.7
1,931,714 + -0.6
1,931,741 + -0.9
1,931,863 + +0.6
1,932,028 - 12702 mRNA_4334 0.11 +0.2
1,932,032 - 12702 mRNA_4334 0.11 +0.4
1,932,180 + 12702 mRNA_4334 0.16 +0.1
1,932,314 + 12702 mRNA_4334 0.20 -0.7
1,932,442 + 12702 mRNA_4334 0.24 +0.3
1,932,604 + 12702 mRNA_4334 0.28 +0.1
1,932,873 + 12702 mRNA_4334 0.36 -0.9
1,932,934 + 12702 mRNA_4334 0.38 -1.3
1,933,053 - 12702 mRNA_4334 0.42 +0.5
1,933,055 - 12702 mRNA_4334 0.42 +0.5
1,933,057 + 12702 mRNA_4334 0.42 -0.6
1,933,325 - 12702 mRNA_4334 0.50 -0.4
1,933,487 - 12702 mRNA_4334 0.55 +0.6
1,933,507 + 12702 mRNA_4334 0.55 -0.1
1,933,633 - 12702 mRNA_4334 0.59 +0.1
1,933,753 - 12702 mRNA_4334 0.63 -0.6
1,933,783 + 12702 mRNA_4334 0.64 +0.0
1,933,798 + 12702 mRNA_4334 0.64 +0.3
1,933,807 + 12702 mRNA_4334 0.64 -0.2
1,933,808 + 12702 mRNA_4334 0.64 +0.5
1,933,822 + 12702 mRNA_4334 0.65 -0.7
1,933,914 + 12702 mRNA_4334 0.68 -1.1
1,933,954 + 12702 mRNA_4334 0.69 -1.3
1,933,965 - 12702 mRNA_4334 0.69 +0.9
1,934,217 - 12702 mRNA_4334 0.77 -1.7
1,934,647 + 12702 mRNA_4334 0.89 -0.5
1,934,651 - 12702 mRNA_4334 0.90 -0.5
1,934,810 + -0.3
1,934,934 + +0.8
1,934,966 + +0.8
1,934,977 + +1.6
1,935,083 + +0.1
1,935,094 - +0.2
1,935,105 - -0.2
1,935,110 + +0.5
1,935,114 - -0.2
1,935,134 + -0.3
1,935,969 + +2.9
1,935,981 - -0.3
1,935,992 - -0.5

Or see this region's nucleotide sequence