Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4362

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12730 and 12731 are separated by 639 nucleotides mRNA_4362: 12730 - KOG0907 Thioredoxin, at 6,490 to 7,048 12730 mRNA_4363: 12731 - K19562 BIO3-BIO1 bifunctional dethiobiotin synthetase / adenosylmethionine---8-amino-7-oxononanoate aminotransferase, at 7,688 to 10,353 12731

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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5,604 - +0.1
5,607 - -0.0
5,690 + +0.4
5,700 - +0.4
5,742 - +1.0
5,755 - -0.5
5,755 - +0.1
5,884 + -0.9
5,896 + +0.5
5,900 + -0.9
6,017 - +0.4
6,033 + +0.2
6,042 - +0.5
6,051 + -0.8
6,053 - +0.4
6,209 - +0.3
6,226 - +1.0
6,282 + -0.3
6,285 + -1.5
6,320 + -0.0
6,322 + +1.7
6,348 + +0.0
6,389 + +0.5
6,424 + -0.6
6,656 + 12730 mRNA_4362 0.30 -0.2
6,678 + 12730 mRNA_4362 0.34 +0.2
6,773 + 12730 mRNA_4362 0.51 +0.5
6,784 + 12730 mRNA_4362 0.53 +1.2
6,822 + 12730 mRNA_4362 0.59 -0.0
6,879 + 12730 mRNA_4362 0.70 -0.1
6,921 - 12730 mRNA_4362 0.77 +0.5
6,936 - 12730 mRNA_4362 0.80 +0.5
6,949 + 12730 mRNA_4362 0.82 +0.1
6,976 - 12730 mRNA_4362 0.87 +0.2
7,082 + -0.3
7,084 + +1.6
7,088 + +0.2
7,097 + +0.8
7,244 + +0.4
7,286 + +0.6
7,436 - +0.5
7,475 + -0.7
7,525 - -0.1
7,538 + -0.6

Or see this region's nucleotide sequence