Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4363

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12730 and 12731 are separated by 639 nucleotides12731 and 12732 are separated by 269 nucleotides mRNA_4362: 12730 - KOG0907 Thioredoxin, at 6,490 to 7,048 12730 mRNA_4363: 12731 - K19562 BIO3-BIO1 bifunctional dethiobiotin synthetase / adenosylmethionine---8-amino-7-oxononanoate aminotransferase, at 7,688 to 10,353 12731 mRNA_4364: 12732 - SUPERFAMILY--SSF48371, at 10,623 to 17,699 12732

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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6,773 + 12730 mRNA_4362 0.51 +0.5
6,784 + 12730 mRNA_4362 0.53 +1.2
6,822 + 12730 mRNA_4362 0.59 -0.0
6,879 + 12730 mRNA_4362 0.70 -0.1
6,921 - 12730 mRNA_4362 0.77 +0.5
6,936 - 12730 mRNA_4362 0.80 +0.5
6,949 + 12730 mRNA_4362 0.82 +0.1
6,976 - 12730 mRNA_4362 0.87 +0.2
7,082 + -0.3
7,084 + +1.6
7,088 + +0.2
7,097 + +0.8
7,244 + +0.4
7,286 + +0.6
7,436 - +0.5
7,475 + -0.7
7,525 - -0.1
7,538 + -0.6
10,411 + +0.5
10,416 + -0.4
10,568 + +0.2
10,602 + +0.2
10,703 - -0.2
10,714 - +0.4
10,823 + +0.2

Or see this region's nucleotide sequence