Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4390

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12757 and 12758 are separated by 711 nucleotides12758 and 12759 are separated by 884 nucleotides mRNA_4389: 12757 - K10735 GINS4, SLD5 GINS complex subunit 4, at 74,390 to 75,580 12757 mRNA_4390: 12758 - K16261 YAT yeast amino acid transporter, at 76,292 to 78,680 12758 mRNA_4391: 12759 - Hypothetical Protein, at 79,565 to 80,188 12759

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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75,647 - -0.8
75,673 - +0.5
75,756 - +1.2
75,776 + +0.9
75,797 - -0.4
75,811 + -0.0
75,811 + -1.2
75,913 + -0.0
75,920 + +0.1
75,930 + +1.1
75,933 + +0.1
75,946 - -0.3
75,955 + +0.5
75,962 + -0.5
76,090 + -1.0
76,093 - -0.2
76,098 - +0.5
76,107 + +1.1
76,125 - -0.0
76,137 - +0.4
76,142 + -0.0
76,268 + +0.2
76,408 - +2.2
76,428 + -0.0
76,430 - +0.1
76,593 + 12758 mRNA_4390 0.13 +0.3
76,689 - 12758 mRNA_4390 0.17 -0.2
76,990 - 12758 mRNA_4390 0.29 +2.1
77,430 + 12758 mRNA_4390 0.48 +0.3
77,439 - 12758 mRNA_4390 0.48 +0.6
78,346 - 12758 mRNA_4390 0.86 -0.1
79,368 + +0.1
79,638 - 12759 mRNA_4391 0.12 +0.4

Or see this region's nucleotide sequence