Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4400

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12767 and 12768 are separated by 569 nucleotides12768 and 12769 are separated by 574 nucleotides mRNA_4399: 12767 - HMMPfam-CFEM domain-PF05730, at 93,703 to 94,660 12767 mRNA_4400: 12768 - Hypothetical Protein, at 95,230 to 97,148 12768 mRNA_4401: 12769 - KOG3303 Predicted alpha-helical protein, potentially involved in replication/repair, at 97,723 to 98,507 12769

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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94,273 + 12767 mRNA_4399 0.59 -0.4
94,433 - 12767 mRNA_4399 0.76 -0.5
94,445 + 12767 mRNA_4399 0.77 +0.0
94,459 - 12767 mRNA_4399 0.79 +0.8
94,574 - -0.9
94,604 - +0.4
95,006 + -0.7
95,145 + -0.1
95,163 + -0.2
95,172 + -0.3
95,273 + +0.2
95,468 + 12768 mRNA_4400 0.12 -0.2
96,195 + 12768 mRNA_4400 0.50 -0.0
96,718 + 12768 mRNA_4400 0.78 +0.0
96,941 - 12768 mRNA_4400 0.89 +0.9
96,965 + +0.8
96,986 - +0.4
97,076 - -0.6
97,135 + +0.2
97,146 + +0.1
97,251 + -0.6
97,337 - +0.2
97,411 + -1.0
97,484 + -0.2
97,513 + +0.7

Or see this region's nucleotide sequence