Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4422

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12789 and 12790 are separated by 95 nucleotides12790 and 12791 are separated by 195 nucleotides mRNA_4421: 12789 - K17765 MDM12 mitochondrial distribution and morphology protein 12, at 144,422 to 145,671 12789 mRNA_4422: 12790 - BLAST Regulator of nonsense transcripts UPF2 [Grifola frond..., at 145,767 to 149,805 12790 mRNA_4423: 12791 - K09528 DNAJC8 DnaJ homolog subfamily C member 8, at 150,001 to 151,135 12791

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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145,813 - -1.3
145,833 + +0.1
146,084 - -0.1
148,137 - 12790 mRNA_4422 0.59 -1.3
148,892 + 12790 mRNA_4422 0.77 +1.2
148,953 + 12790 mRNA_4422 0.79 -0.3
148,957 - 12790 mRNA_4422 0.79 -0.6
149,195 + 12790 mRNA_4422 0.85 +0.2
149,359 - 12790 mRNA_4422 0.89 -0.3
149,457 + +0.3
149,717 + +0.2
149,832 - +0.5
149,832 - -2.2
149,841 + -1.7
149,841 - -0.4
149,841 - +0.5
149,925 + -0.2
149,931 + -1.7
149,935 - -0.8
149,936 - +0.1

Or see this region's nucleotide sequence