Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4426

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12793 and 12794 are separated by 341 nucleotides12794 and 12795 are separated by 996 nucleotides mRNA_4425: 12793 - KOG3844 Predicted component of NuA3 histone acetyltransferase complex, at 153,897 to 156,025 12793 mRNA_4426: 12794 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 156,367 to 159,071 12794 mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160,068 to 161,346 12795

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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155,449 - 12793 mRNA_4425 0.73 -1.8
155,455 - 12793 mRNA_4425 0.73 +0.3
155,497 - 12793 mRNA_4425 0.75 +0.8
155,640 + 12793 mRNA_4425 0.82 -0.6
155,659 - 12793 mRNA_4425 0.83 -0.9
155,675 - 12793 mRNA_4425 0.84 -0.3
155,710 - 12793 mRNA_4425 0.85 -0.2
155,760 + 12793 mRNA_4425 0.88 +1.1
155,762 - 12793 mRNA_4425 0.88 +1.1
155,773 - 12793 mRNA_4425 0.88 -2.8
155,922 - -1.4
156,072 + +0.3
156,078 + -1.2
156,081 - +1.7
156,099 + -0.1
156,125 - -0.3
156,139 + +0.5
156,213 - -1.3
156,339 - -0.0
156,515 - -1.3
156,674 - 12794 mRNA_4426 0.11 +0.4
156,852 + 12794 mRNA_4426 0.18 -0.7
156,939 - 12794 mRNA_4426 0.21 -0.5
157,117 + 12794 mRNA_4426 0.28 +0.7
157,408 + 12794 mRNA_4426 0.38 +0.6
157,427 + 12794 mRNA_4426 0.39 -1.7
157,440 - 12794 mRNA_4426 0.40 -0.3
157,520 - 12794 mRNA_4426 0.43 -0.0
157,556 + 12794 mRNA_4426 0.44 -0.7
157,577 + 12794 mRNA_4426 0.45 +0.0
157,835 - 12794 mRNA_4426 0.54 +0.7
157,951 - 12794 mRNA_4426 0.59 -0.0
158,113 - 12794 mRNA_4426 0.65 +0.4
158,259 - 12794 mRNA_4426 0.70 +0.8
158,611 + 12794 mRNA_4426 0.83 -0.5
159,018 - +0.0
159,074 - -0.6
159,146 - +1.1
159,230 + +0.3
159,596 + +0.4
159,873 + -0.0
159,873 - -0.1
160,010 + +0.7
160,013 - +0.4
160,025 + -0.1

Or see this region's nucleotide sequence