Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4462

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12830 and 12831 are separated by 706 nucleotides mRNA_4462: 12830 - Hypothetical Protein, at 241,842 to 242,730 12830 mRNA_4463: 12831 - Hypothetical Protein, at 243,437 to 244,042 12831

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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240,873 - -1.7
240,874 - +0.2
240,877 - +1.4
241,210 + -1.4
241,363 + -1.4
241,433 - +1.5
241,475 - -2.3
241,586 - +0.1
241,601 + +0.4
241,738 + -0.1
241,776 - +0.1
241,918 - +0.7
241,919 + -1.8
241,946 + 12830 mRNA_4462 0.12 +0.6
242,041 - 12830 mRNA_4462 0.22 -1.6
242,044 + 12830 mRNA_4462 0.23 +0.0
242,068 + 12830 mRNA_4462 0.25 -1.3
242,070 + 12830 mRNA_4462 0.26 +0.7
242,075 - 12830 mRNA_4462 0.26 -0.4
242,088 + 12830 mRNA_4462 0.28 +0.2
242,185 - 12830 mRNA_4462 0.39 -0.4
242,209 - 12830 mRNA_4462 0.41 +1.0
242,215 + 12830 mRNA_4462 0.42 +0.8
242,231 - 12830 mRNA_4462 0.44 +0.4
242,299 - 12830 mRNA_4462 0.51 -1.0
242,315 + 12830 mRNA_4462 0.53 +0.8
242,331 - 12830 mRNA_4462 0.55 -1.2
242,342 - 12830 mRNA_4462 0.56 -0.9
242,361 + 12830 mRNA_4462 0.58 -1.6
242,362 + 12830 mRNA_4462 0.58 +0.4
242,388 - 12830 mRNA_4462 0.61 +1.3
242,437 + 12830 mRNA_4462 0.67 +0.0
242,454 + 12830 mRNA_4462 0.69 +0.2
242,465 - 12830 mRNA_4462 0.70 -0.0
242,471 - 12830 mRNA_4462 0.71 +0.5
242,477 - 12830 mRNA_4462 0.71 +0.8
242,478 + 12830 mRNA_4462 0.72 +0.8
242,495 + 12830 mRNA_4462 0.73 +0.2
242,637 + 12830 mRNA_4462 0.89 -0.1
242,638 - 12830 mRNA_4462 0.90 +0.1
242,649 - +0.6
242,651 - -0.7
242,651 - +0.2
242,671 + +0.6
242,676 + -0.9
242,679 + +0.4
242,706 + +0.5
242,733 - -0.9
242,776 - -0.7
242,782 + +0.6
242,793 + +0.3
242,842 + +0.1
242,861 - +1.4
242,874 + +0.1
242,902 - -0.1
242,911 - -0.5
242,925 - -0.1
242,934 - -0.9
242,934 - -0.3
242,936 - +1.1
242,938 + -0.3
242,957 - -0.0
243,146 + -0.3
243,211 + -0.9
243,212 - -0.8
243,220 - +0.2
243,225 + +0.2
243,227 - -0.1
243,228 - -1.6
243,235 + -2.8
243,278 - +1.1
243,366 - -0.1
243,367 + +0.8
243,379 + -0.3
243,381 + -0.0
243,384 - -0.2
243,390 + +1.3
243,393 + -0.3
243,409 - -1.2
243,520 - 12831 mRNA_4463 0.14 -2.7
243,541 - 12831 mRNA_4463 0.17 +0.2
243,592 - 12831 mRNA_4463 0.26 -1.3
243,633 - 12831 mRNA_4463 0.32 +0.7
243,677 - 12831 mRNA_4463 0.40 +0.1
243,683 + 12831 mRNA_4463 0.41 -1.7
243,689 - 12831 mRNA_4463 0.42 +0.2
243,708 - 12831 mRNA_4463 0.45 -0.4
243,710 - 12831 mRNA_4463 0.45 -1.6

Or see this region's nucleotide sequence