Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4482

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12849 and 12850 are separated by 315 nucleotides12850 and 12851 are separated by 107 nucleotides mRNA_4481: 12849 - Hypothetical Protein, at 284,751 to 285,386 12849 mRNA_4482: 12850 - K03144 TFIIH4, GTF2H4, TFB2 transcription initiation factor TFIIH subunit 4, at 285,702 to 287,837 12850 mRNA_4483: 12851 - SUPERFAMILY--SSF53098, at 287,945 to 289,726 12851

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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284,763 - +0.9
284,768 - +0.4
284,778 - -0.3
284,785 + -0.7
284,905 - 12849 mRNA_4481 0.24 -0.8
284,928 + 12849 mRNA_4481 0.28 +0.1
285,151 - 12849 mRNA_4481 0.63 -0.1
285,196 + 12849 mRNA_4481 0.70 +1.1
285,210 - 12849 mRNA_4481 0.72 +1.2
285,244 + 12849 mRNA_4481 0.78 -0.5
285,633 - -0.4
285,648 + -1.3
287,674 - -1.4
287,837 + -0.5
287,922 + -0.1
287,943 + -0.1
287,977 - -0.7
287,985 - +0.9
288,000 - -0.7

Or see this region's nucleotide sequence