Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4494

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12861 and 12862 are separated by 296 nucleotides12862 and 12863 are separated by 156 nucleotides mRNA_4493: 12861 - SUPERFAMILY--SSF52047, at 309,576 to 311,024 12861 mRNA_4494: 12862 - SUPERFAMILY--SSF52047, at 311,321 to 312,953 12862 mRNA_4495: 12863 - HMMPfam-TRAPP trafficking subunit Trs65-PF12735, at 313,110 to 316,762 12863

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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310,345 - 12861 mRNA_4493 0.53 -0.3
310,463 - 12861 mRNA_4493 0.61 +0.0
310,789 - 12861 mRNA_4493 0.84 +0.3
311,111 - -0.8
311,249 + +0.2
311,565 + 12862 mRNA_4494 0.15 +0.3
311,654 - 12862 mRNA_4494 0.20 -0.0
311,734 - 12862 mRNA_4494 0.25 -1.4
312,243 + 12862 mRNA_4494 0.56 -0.7
312,417 + 12862 mRNA_4494 0.67 +0.4
312,420 - 12862 mRNA_4494 0.67 +0.4
312,444 + 12862 mRNA_4494 0.69 +1.9
312,551 + 12862 mRNA_4494 0.75 +1.7
312,699 - 12862 mRNA_4494 0.84 +0.3
312,750 + 12862 mRNA_4494 0.88 -1.5
312,834 + +0.2
312,888 + +0.5
312,916 + +1.5
313,004 - +0.7
313,042 + +0.3
313,155 - -0.3
313,171 + +1.1
313,190 - +0.4
313,203 + +0.4
313,329 + +0.5
313,332 - -0.1
313,349 + +0.7
313,459 + +0.9
313,624 - 12863 mRNA_4495 0.14 +0.1
313,628 + 12863 mRNA_4495 0.14 -1.0
313,639 + 12863 mRNA_4495 0.14 -1.8
313,920 - 12863 mRNA_4495 0.22 +0.0
313,933 + 12863 mRNA_4495 0.23 -1.0

Or see this region's nucleotide sequence