Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4495

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12862 and 12863 are separated by 156 nucleotides12863 and 12864 are separated by 284 nucleotides mRNA_4494: 12862 - SUPERFAMILY--SSF52047, at 311,321 to 312,953 12862 mRNA_4495: 12863 - HMMPfam-TRAPP trafficking subunit Trs65-PF12735, at 313,110 to 316,762 12863 mRNA_4496: 12864 - SUPERFAMILY--SSF81383, at 317,047 to 318,791 12864

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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312,243 + 12862 mRNA_4494 0.56 -0.7
312,417 + 12862 mRNA_4494 0.67 +0.4
312,420 - 12862 mRNA_4494 0.67 +0.4
312,444 + 12862 mRNA_4494 0.69 +1.9
312,551 + 12862 mRNA_4494 0.75 +1.7
312,699 - 12862 mRNA_4494 0.84 +0.3
312,750 + 12862 mRNA_4494 0.88 -1.5
312,834 + +0.2
312,888 + +0.5
312,916 + +1.5
313,004 - +0.7
313,042 + +0.3
313,155 - -0.3
313,171 + +1.1
313,190 - +0.4
313,203 + +0.4
313,329 + +0.5
313,332 - -0.1
313,349 + +0.7
313,459 + +0.9
313,624 - 12863 mRNA_4495 0.14 +0.1
313,628 + 12863 mRNA_4495 0.14 -1.0
313,639 + 12863 mRNA_4495 0.14 -1.8
313,920 - 12863 mRNA_4495 0.22 +0.0
313,933 + 12863 mRNA_4495 0.23 -1.0
314,041 - 12863 mRNA_4495 0.25 -0.5
314,239 - 12863 mRNA_4495 0.31 +0.4
314,455 - 12863 mRNA_4495 0.37 +0.3
314,855 - 12863 mRNA_4495 0.48 -0.1
314,919 - 12863 mRNA_4495 0.50 -0.8
314,952 - 12863 mRNA_4495 0.50 -0.5
315,258 - 12863 mRNA_4495 0.59 +0.0
315,403 + 12863 mRNA_4495 0.63 +0.3
315,419 - 12863 mRNA_4495 0.63 -0.6
315,502 - 12863 mRNA_4495 0.65 +0.2
315,505 - 12863 mRNA_4495 0.66 +0.6
315,735 + 12863 mRNA_4495 0.72 +0.5
315,847 + 12863 mRNA_4495 0.75 -0.0
315,905 - 12863 mRNA_4495 0.77 +0.5
315,974 - 12863 mRNA_4495 0.78 +0.6
315,976 + 12863 mRNA_4495 0.78 +1.3
316,556 - -0.2
316,619 + -0.7
316,653 + +0.6
316,700 - -1.2
316,846 - +1.1
316,850 + -0.0
316,967 + -0.0
317,297 - 12864 mRNA_4496 0.14 -0.7
317,326 - 12864 mRNA_4496 0.16 +0.9
317,337 - 12864 mRNA_4496 0.17 +1.0
317,422 - 12864 mRNA_4496 0.21 +0.0
317,706 - 12864 mRNA_4496 0.38 +0.7

Or see this region's nucleotide sequence