Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4523

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12890 and 12891 are separated by 27 nucleotides12891 and 12892 are separated by 405 nucleotides mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375,338 to 377,134 12890 mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377,162 to 379,234 12891 mRNA_4524: 12892 - Hypothetical Protein, at 379,640 to 380,547 12892

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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376,264 + 12890 mRNA_4522 0.52 -0.0
376,323 - 12890 mRNA_4522 0.55 +2.2
377,259 - +0.2
378,019 + 12891 mRNA_4523 0.41 +1.3
378,171 + 12891 mRNA_4523 0.49 +0.0
378,592 - 12891 mRNA_4523 0.69 -0.3
378,870 - 12891 mRNA_4523 0.82 -0.2
379,009 - 12891 mRNA_4523 0.89 -0.4
379,047 + -1.3
379,051 + -0.3
379,071 - +0.2
379,091 + -0.6
379,166 - -0.0
379,182 + +0.7
379,182 - +1.5
379,190 - -0.4
379,191 + +0.9
379,195 - +0.7
379,222 + +1.6
379,323 - +0.0
379,330 + +0.9
379,338 + -0.2
379,338 + -0.7
379,465 - +0.2
379,481 - +0.2
379,506 - +0.2
379,618 - -1.0
379,756 - 12892 mRNA_4524 0.13 -0.0
379,764 + 12892 mRNA_4524 0.14 +0.2
379,765 + 12892 mRNA_4524 0.14 +0.3
379,771 + 12892 mRNA_4524 0.14 +1.2
379,774 - 12892 mRNA_4524 0.15 +0.3
379,932 + 12892 mRNA_4524 0.32 -0.6
380,089 + 12892 mRNA_4524 0.49 +0.3
380,187 + 12892 mRNA_4524 0.60 +1.7

Or see this region's nucleotide sequence