Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4530

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12898 and 12899 are separated by 92 nucleotides mRNA_4530: 12898 - K00605 gcvT, AMT aminomethyltransferase, at 393,210 to 395,082 12898 mRNA_4531: 12899 - K03671 trxA thioredoxin 1, at 395,175 to 396,195 12899

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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392,813 - +0.9
392,840 - -0.2
392,907 + +0.6
392,974 - +0.4
392,984 - +0.6
392,999 - +0.2
393,125 - +0.1
393,139 - +0.9
393,149 + -0.1
393,155 + -0.2
393,164 + +1.0
393,228 + -0.4
393,258 + -1.1
393,289 - -0.3
393,449 + 12898 mRNA_4530 0.13 -0.8
393,860 - 12898 mRNA_4530 0.35 +0.6
394,722 + 12898 mRNA_4530 0.81 -1.1
394,898 + -0.3
395,059 + +0.1
395,465 - 12899 mRNA_4531 0.28 +0.3
395,500 + 12899 mRNA_4531 0.32 -1.3
395,520 - 12899 mRNA_4531 0.34 +0.1
395,952 + 12899 mRNA_4531 0.76 -1.5

Or see this region's nucleotide sequence