Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4626

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12993 and 12994 are separated by 246 nucleotides12994 and 12995 are separated by 281 nucleotides mRNA_4625: 12993 - K09660 MPDU1 mannose-P-dolichol utilization defect 1, at 629,352 to 630,709 12993 mRNA_4626: 12994 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 630,956 to 632,424 12994 mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632,706 to 638,769 12995

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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630,253 - 12993 mRNA_4625 0.66 +0.6
630,431 - 12993 mRNA_4625 0.79 -0.6
630,825 + -0.2
630,844 - -0.1
630,860 - -0.2
630,866 - -0.2
630,867 + -1.5
630,876 + -1.2
630,885 + -0.7
630,892 - +1.0
630,912 - +1.0
631,104 + 12994 mRNA_4626 0.10 +0.4
631,108 + 12994 mRNA_4626 0.10 +0.4
631,118 + 12994 mRNA_4626 0.11 -0.8
631,220 - 12994 mRNA_4626 0.18 -0.3
631,224 - 12994 mRNA_4626 0.18 -1.0
631,992 + 12994 mRNA_4626 0.71 -1.5
632,513 + -1.0
632,684 - -1.0
632,836 - +0.4
632,996 + -3.1

Or see this region's nucleotide sequence