Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4628

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12995 and 12996 are separated by 490 nucleotides12996 and 12997 are separated by 947 nucleotides mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632,706 to 638,769 12995 mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639,260 to 641,629 12996 mRNA_4629: 12997 - K11971 RNF14, ARA54 E3 ubiquitin-protein ligase RNF14, at 642,577 to 644,729 12997

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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638,545 - -0.3
638,789 + +0.6
638,800 - +0.1
638,817 - -0.6
638,826 - -0.1
638,952 - -0.6
638,958 + +0.3
639,112 + -0.8
639,403 - -0.3
639,424 - +0.4
639,426 + -0.5
639,427 + -0.7
639,540 - 12996 mRNA_4628 0.12 +0.6
639,858 + 12996 mRNA_4628 0.25 -1.7
639,900 - 12996 mRNA_4628 0.27 -0.6
640,451 + 12996 mRNA_4628 0.50 -0.8
641,458 + -0.2
641,651 - -0.5
641,744 - -1.3
642,048 - +1.1
642,138 + -1.1
642,353 - +1.2
642,625 + +0.1

Or see this region's nucleotide sequence