Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4637

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13004 and 13005 are separated by 440 nucleotides13005 and 13006 are separated by 93 nucleotides mRNA_4636: 13004 - BLAST fungal specific transcription protein, putative [Rhiz..., at 660,911 to 661,323 13004 mRNA_4637: 13005 - Hypothetical Protein, at 661,764 to 663,098 13005 mRNA_4638: 13006 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839,SUPERFAMILY--SSF52266, at 663,192 to 664,874 13006

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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660,834 + +0.5
660,858 + +0.3
660,860 - -0.1
660,868 + -0.6
661,148 - 13004 mRNA_4636 0.57 +0.6
661,164 - 13004 mRNA_4636 0.61 +0.2
661,167 + 13004 mRNA_4636 0.62 +0.3
661,170 + 13004 mRNA_4636 0.63 +0.6
661,297 - -0.2
661,713 - +0.0
661,728 - -0.2
661,729 - -0.6
661,999 + 13005 mRNA_4637 0.18 +0.3
662,018 + 13005 mRNA_4637 0.19 -0.7
662,021 - 13005 mRNA_4637 0.19 -1.3
662,271 - 13005 mRNA_4637 0.38 -0.2
662,272 + 13005 mRNA_4637 0.38 +0.7
662,540 - 13005 mRNA_4637 0.58 +0.8
662,715 - 13005 mRNA_4637 0.71 -0.4
662,731 - 13005 mRNA_4637 0.72 -0.2
662,924 + 13005 mRNA_4637 0.87 +0.5
663,169 + +0.2
663,519 - 13006 mRNA_4638 0.19 -0.0
663,745 + 13006 mRNA_4638 0.33 +0.3
663,787 + 13006 mRNA_4638 0.35 +0.2
664,058 + 13006 mRNA_4638 0.51 -0.3

Or see this region's nucleotide sequence