Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4679

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13046 and 13047 are separated by 962 nucleotides13047 and 13048 are separated by 212 nucleotides mRNA_4678: 13046 - K11252 H2B histone H2B, at 753,656 to 754,294 13046 mRNA_4679: 13047 - Hypothetical Protein, at 755,257 to 756,395 13047 mRNA_4680: 13048 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 756,608 to 758,345 13048

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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755,170 - -0.3
755,519 - 13047 mRNA_4679 0.23 -0.6
755,753 - 13047 mRNA_4679 0.44 -0.2
755,910 - 13047 mRNA_4679 0.57 -0.5
756,191 + 13047 mRNA_4679 0.82 -1.1
756,191 + 13047 mRNA_4679 0.82 -0.3
756,223 - 13047 mRNA_4679 0.85 -0.3
757,254 + 13048 mRNA_4680 0.37 -1.9
757,374 - 13048 mRNA_4680 0.44 +0.3

Or see this region's nucleotide sequence