Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4732

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13100 and 13101 are separated by 557 nucleotides mRNA_4732: 13100 - HMMPfam-Major intrinsic protein-PF00230,PRINTS-Major intrinsic protein family signature-PR00783,SUPERFAMILY--SSF81338, at 879,432 to 880,805 13100 mRNA_4733: 13101 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 881,363 to 882,284 13101

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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878,467 - -0.7
878,497 - +0.1
878,528 - -0.3
878,533 + -1.2
878,549 - +0.2
878,549 - -0.6
878,557 + -0.6
878,585 - -1.8
878,586 + +0.3
878,592 - +0.5
878,600 + -0.0
878,674 + -0.3
878,675 - -1.0
878,705 - +0.1
878,710 - +1.0
878,713 - +0.1
878,715 + -0.2
878,721 - +0.2
878,722 + -0.1
878,729 - +0.2
878,731 + -0.9
878,736 - -0.5
878,737 + -0.2
878,739 - +0.1
878,758 + +0.8
878,758 + -0.9
878,763 + +0.0
878,768 - -0.4
878,775 - +1.5
878,776 + -2.3
878,779 - -1.0
878,779 - -0.1
878,784 + -0.2
878,790 + +0.3
878,791 - +0.4
878,798 - +0.4
878,799 + -0.6
878,808 + +0.7
878,815 - -1.1
878,818 + -0.7
878,818 + -1.1
878,842 + +0.1
878,847 - -0.2
878,899 - +0.1
878,913 - +0.5
878,941 - +0.1
878,953 + +0.7
878,973 + -2.2
879,034 - +0.3
879,076 - -0.9
879,084 + -0.5
879,087 - +0.7
879,088 + +0.7
879,088 + +1.1
879,089 - +0.0
879,090 + -0.1
879,093 + -2.3
879,106 - -0.4
879,112 + +0.4
879,112 + -0.2
879,112 + +1.5
879,116 + -0.2
879,133 + -0.5
879,136 - +0.6
879,145 - +0.3
879,147 - +0.5
879,154 + -0.6
879,157 - -1.0
879,159 - +0.7
879,159 - -0.5
879,161 - -0.5
879,162 - -0.1
879,165 + +1.6
879,172 - -0.3
879,172 - -0.1
879,173 - -0.5
879,174 - -1.2
879,178 + +0.1
879,188 - +0.2
879,188 - +0.0
879,189 + +0.3
879,190 - -0.5
879,193 + -1.4
879,195 - -1.2
879,197 - +0.1
879,197 + +0.1
879,198 - +0.2
879,205 - -0.7
879,212 + +0.3
879,216 + +0.2
879,218 - +0.6
879,225 + +0.1
879,230 + -0.9
879,238 + +0.1
879,239 - -0.1
879,260 + +0.7
879,273 - -0.3
879,282 + -0.1
879,296 - -2.1
879,296 - -0.3
879,305 + +0.0
879,308 - -0.1
879,309 - -0.0
879,323 - -0.3
879,331 - -1.3
879,331 - -0.9
879,360 - +0.2
879,370 + -0.9
879,370 - -1.2
879,401 + -0.0
879,417 - +0.4
879,419 + +0.3
879,423 - +0.4
879,423 + -0.2
879,427 - +0.4
879,430 + +0.3
879,433 + -0.1
879,439 - -0.4
879,439 - +0.1
879,441 - -0.1
879,444 - -1.4
879,444 + -1.7
879,458 - -1.0
879,474 + +0.1
879,480 - -0.8
879,484 + -0.0
879,597 - 13100 mRNA_4732 0.12 -0.5
879,609 + 13100 mRNA_4732 0.13 -0.3
879,613 - 13100 mRNA_4732 0.13 -0.7
879,616 - 13100 mRNA_4732 0.13 +0.2
879,626 + 13100 mRNA_4732 0.14 -0.3
879,635 + 13100 mRNA_4732 0.15 -0.6
879,649 + 13100 mRNA_4732 0.16 +0.6
879,768 - 13100 mRNA_4732 0.24 -0.9
879,895 - 13100 mRNA_4732 0.34 -1.8
879,916 - 13100 mRNA_4732 0.35 +0.2
879,925 + 13100 mRNA_4732 0.36 -2.1
879,929 - 13100 mRNA_4732 0.36 +0.2
880,301 - 13100 mRNA_4732 0.63 -0.7
880,330 - 13100 mRNA_4732 0.65 +0.4
880,336 - 13100 mRNA_4732 0.66 +0.5
880,467 - 13100 mRNA_4732 0.75 -0.9
880,817 - -2.2
881,044 - +0.3
881,045 + -0.2
881,048 + -0.4
881,086 - +0.5
881,159 - +0.2
881,164 - -0.3
881,171 - +0.5
881,184 + -0.7
881,185 + -0.1
881,225 + +0.3
881,243 + +0.7
881,257 - -0.4
881,293 - -0.4
881,428 + -0.2
881,506 - 13101 mRNA_4733 0.16 +0.0
881,525 - 13101 mRNA_4733 0.18 +0.0
881,791 - 13101 mRNA_4733 0.46 -0.5

Or see this region's nucleotide sequence