Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4746

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13113 and 13114 are separated by 290 nucleotides13114 and 13115 are separated by 316 nucleotides mRNA_4745: 13113 - K17086 TM9SF2_4 transmembrane 9 superfamily member 2/4, at 908,739 to 911,438 13113 mRNA_4746: 13114 - Hypothetical Protein, at 911,729 to 913,359 13114 mRNA_4747: 13115 - SUPERFAMILY--SSF52047, at 913,676 to 915,300 13115

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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910,935 + 13113 mRNA_4745 0.81 -0.4
911,021 - 13113 mRNA_4745 0.85 -0.2
911,092 + 13113 mRNA_4745 0.87 +0.3
911,287 + -1.7
911,300 + +1.5
911,352 - +0.4
911,442 + -0.0
911,475 - +0.4
911,482 + +0.2
911,578 + -1.3
911,580 - +0.2
911,591 - +0.3
911,595 + +0.3
911,598 - +0.2
911,599 + -0.3
911,613 - +0.5
911,630 + +0.5
911,754 - -0.4
911,759 - -1.4
911,760 + -1.1
911,782 - -0.8
911,782 + -1.8
911,811 + -1.1
911,871 + -0.2
912,027 + 13114 mRNA_4746 0.18 +0.1
912,071 - 13114 mRNA_4746 0.21 +0.6
912,085 - 13114 mRNA_4746 0.22 -0.2
912,220 - 13114 mRNA_4746 0.30 +0.1
912,332 - 13114 mRNA_4746 0.37 -0.7
912,488 - 13114 mRNA_4746 0.47 +0.7
912,523 - 13114 mRNA_4746 0.49 +0.8
912,622 + 13114 mRNA_4746 0.55 +0.4
912,671 + 13114 mRNA_4746 0.58 -0.8
912,802 - 13114 mRNA_4746 0.66 +0.3
912,918 - 13114 mRNA_4746 0.73 -0.1
912,933 + 13114 mRNA_4746 0.74 -0.7
912,945 - 13114 mRNA_4746 0.75 +0.5
913,311 - -0.2
913,404 + -0.3
913,427 + -0.6
913,549 + -0.1
913,553 - -1.2
913,557 + -0.4
913,567 - -0.3
913,679 - -0.4
913,682 - +0.3
913,700 + +0.2
913,708 + +0.2
913,718 + -0.7
913,722 + -0.7
913,753 - +0.2
913,755 - -0.7
913,762 + +0.5
913,807 + -0.1
913,813 + -2.6
913,816 - -2.2
913,867 - 13115 mRNA_4747 0.12 +0.6
913,900 + 13115 mRNA_4747 0.14 +0.7
913,965 - 13115 mRNA_4747 0.18 -2.0
914,001 - 13115 mRNA_4747 0.20 +0.2
914,252 - 13115 mRNA_4747 0.35 +0.8

Or see this region's nucleotide sequence