Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4762

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13130 and 13131 are separated by 709 nucleotides mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960 13130 mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404 13131

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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945,832 - -0.3
945,837 - -0.6
945,842 + -1.8
946,099 - -1.4
946,168 + +0.7
946,173 + +0.6
946,292 - -0.1
946,445 - +0.9
946,516 + -0.4
946,549 - -0.5
946,746 + -0.2
947,222 - 13130 mRNA_4762 0.37 -0.4
947,224 - 13130 mRNA_4762 0.37 +0.5
947,679 - 13130 mRNA_4762 0.76 +0.7
947,858 + -0.6
948,115 - -0.7
948,136 - -0.4
948,187 + -0.0
948,188 + -0.5
948,292 - +0.1
948,426 - +0.1
948,458 + +1.6
948,584 + +0.6

Or see this region's nucleotide sequence