Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4769

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13136 and 13137 are separated by 325 nucleotides13137 and 13138 are separated by 374 nucleotides mRNA_4768: 13136 - Hypothetical Protein, at 966,490 to 969,299 13136 mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969,625 to 971,504 13137 mRNA_4770: 13138 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 971,879 to 977,050 13138

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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968,732 + 13136 mRNA_4768 0.80 -0.9
968,860 + 13136 mRNA_4768 0.84 +0.4
968,872 - 13136 mRNA_4768 0.85 +0.4
969,046 - -2.0
969,154 + +0.2
969,160 - -0.3
969,428 - +0.1
969,437 + -0.2
969,447 - +0.8
969,524 + -0.4
969,635 - +0.0
971,678 + -0.0
971,843 - +0.7
971,857 + -1.1
971,991 - +1.8
972,007 + +0.7
972,262 - +1.1

Or see this region's nucleotide sequence