Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4777

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13144 and 13145 are separated by 644 nucleotides13145 and 13146 are separated by 872 nucleotides mRNA_4776: 13144 - Hypothetical Protein, at 990,713 to 991,663 13144 mRNA_4777: 13145 - Hypothetical Protein, at 992,308 to 993,106 13145 mRNA_4778: 13146 - Hypothetical Protein, at 993,979 to 994,945 13146

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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991,418 - 13144 mRNA_4776 0.74 +1.2
991,445 + 13144 mRNA_4776 0.77 -0.9
991,555 - 13144 mRNA_4776 0.89 +0.3
991,717 + +0.4
991,828 - -0.0
991,835 - +1.3
991,972 - -1.0
991,980 - +0.1
991,989 - -0.5
991,990 + -0.4
992,147 - +0.5
992,281 + +0.2
992,714 - 13145 mRNA_4777 0.51 +0.1
993,039 - -0.5
993,187 + -0.3
993,279 - -1.7
993,320 - -0.7
993,415 + -0.2
993,432 + -0.7
993,436 - -1.0
993,442 - +0.3
993,450 - -0.6
993,587 + +1.3
993,602 + -0.4
993,729 - +0.4
993,737 - +0.1
993,738 - +0.2
993,746 + -0.9
993,754 + +0.5
993,758 + -0.2
993,789 - +0.1
993,831 - +0.1
993,902 + -0.8
994,008 - +0.6
994,009 + +0.2
994,049 + -1.5
994,050 - +0.1
994,058 + -0.2

Or see this region's nucleotide sequence