Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4783

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13150 and 13151 are separated by 297 nucleotides13151 and 13152 are separated by 915 nucleotides mRNA_4782: 13150 - Hypothetical Protein, at 1,002,012 to 1,003,066 13150 mRNA_4783: 13151 - Hypothetical Protein, at 1,003,364 to 1,007,134 13151 mRNA_4784: 13152 - BLAST calmodulin-like protein [Mycena chlorophos], at 1,008,050 to 1,008,769 13152

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,002,599 - 13150 mRNA_4782 0.56 -0.1
1,002,987 + +0.2
1,003,129 - -0.2
1,003,173 + -0.5
1,003,267 - +0.8
1,003,297 - -0.4
1,003,362 + -0.3
1,003,402 - +0.5
1,003,556 + +0.1
1,003,691 - -0.7
1,003,869 + 13151 mRNA_4783 0.13 +0.5
1,003,976 + 13151 mRNA_4783 0.16 +0.1
1,003,976 + 13151 mRNA_4783 0.16 +0.5
1,003,996 + 13151 mRNA_4783 0.17 +0.7
1,004,121 + 13151 mRNA_4783 0.20 +0.6
1,004,162 + 13151 mRNA_4783 0.21 -0.3
1,004,299 - 13151 mRNA_4783 0.25 -0.2
1,004,310 + 13151 mRNA_4783 0.25 -1.3
1,004,349 + 13151 mRNA_4783 0.26 +0.4
1,004,565 + 13151 mRNA_4783 0.32 +0.9
1,004,740 - 13151 mRNA_4783 0.36 +0.0
1,004,845 - 13151 mRNA_4783 0.39 +0.1
1,004,852 - 13151 mRNA_4783 0.39 -0.8
1,004,857 - 13151 mRNA_4783 0.40 -0.5
1,004,892 - 13151 mRNA_4783 0.41 +0.0
1,004,897 - 13151 mRNA_4783 0.41 -0.4
1,004,901 + 13151 mRNA_4783 0.41 +0.2
1,004,902 + 13151 mRNA_4783 0.41 -0.5
1,004,905 - 13151 mRNA_4783 0.41 +0.5
1,004,905 - 13151 mRNA_4783 0.41 -0.1
1,004,907 + 13151 mRNA_4783 0.41 -0.1
1,004,914 - 13151 mRNA_4783 0.41 +0.9
1,004,930 - 13151 mRNA_4783 0.42 -0.4
1,004,930 - 13151 mRNA_4783 0.42 +1.1
1,004,930 - 13151 mRNA_4783 0.42 -0.1
1,004,950 + 13151 mRNA_4783 0.42 -0.5
1,004,972 + 13151 mRNA_4783 0.43 -0.9
1,004,989 + 13151 mRNA_4783 0.43 +0.3
1,004,992 + 13151 mRNA_4783 0.43 -0.9
1,004,992 - 13151 mRNA_4783 0.43 -0.1
1,005,033 - 13151 mRNA_4783 0.44 +0.4
1,005,037 - 13151 mRNA_4783 0.44 -0.1
1,005,038 + 13151 mRNA_4783 0.44 -0.4
1,005,038 + 13151 mRNA_4783 0.44 +0.6
1,005,039 - 13151 mRNA_4783 0.44 +0.0
1,005,041 + 13151 mRNA_4783 0.44 -0.2
1,005,042 - 13151 mRNA_4783 0.44 -0.1
1,005,044 - 13151 mRNA_4783 0.45 +0.5
1,005,046 + 13151 mRNA_4783 0.45 +0.0
1,005,048 + 13151 mRNA_4783 0.45 +0.0
1,005,051 + 13151 mRNA_4783 0.45 -0.2
1,005,056 - 13151 mRNA_4783 0.45 +0.7
1,005,059 - 13151 mRNA_4783 0.45 +0.5
1,005,063 - 13151 mRNA_4783 0.45 -0.1
1,005,063 + 13151 mRNA_4783 0.45 +0.2
1,005,069 + 13151 mRNA_4783 0.45 -0.3
1,005,070 + 13151 mRNA_4783 0.45 -0.3
1,005,079 + 13151 mRNA_4783 0.45 -0.4
1,005,202 - 13151 mRNA_4783 0.49 -0.9
1,005,489 - 13151 mRNA_4783 0.56 +0.7
1,005,801 - 13151 mRNA_4783 0.65 -0.2
1,006,092 + 13151 mRNA_4783 0.72 +0.1
1,006,529 - 13151 mRNA_4783 0.84 +0.9
1,006,659 + 13151 mRNA_4783 0.87 -0.7
1,006,774 + -0.4
1,006,812 + +0.5
1,006,834 + -0.7
1,006,837 + -0.5
1,006,901 - +0.1
1,006,910 - +1.0
1,006,915 + -0.2
1,006,922 - -0.1
1,006,929 + -0.5
1,006,946 + -0.0
1,006,956 - -1.2
1,006,959 - -0.6
1,006,971 - -0.1
1,006,980 - -0.8
1,006,981 - +0.0
1,006,990 - -0.3
1,006,991 - +0.0
1,006,991 + -0.2
1,007,000 + -1.1
1,007,006 + -0.6
1,007,008 + -1.0
1,007,008 + -0.4
1,007,023 + -0.3
1,007,066 - -0.4
1,007,073 - +0.7
1,007,076 - +0.5
1,007,082 + +1.4
1,007,097 - +1.0
1,007,110 + -0.4
1,007,211 + +0.2
1,007,261 - -0.3
1,007,400 + +0.8
1,007,414 - -0.3
1,007,430 + -0.6
1,007,483 - -0.4
1,007,664 - -0.7
1,007,677 + -0.2
1,007,684 - +1.2
1,007,700 - -0.8
1,007,716 - +0.2
1,007,732 - -0.7
1,007,845 + -1.7
1,008,134 - 13152 mRNA_4784 0.12 +0.1

Or see this region's nucleotide sequence