Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4811

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13179 and 13180 are separated by 569 nucleotides mRNA_4811: 13179 - Hypothetical Protein, at 1,070,927 to 1,071,764 13179 mRNA_4812: 13180 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,072,334 to 1,073,346 13180

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,070,192 - +0.4
1,070,241 - +0.3
1,070,305 + +0.3
1,070,337 - -0.6
1,070,343 + +1.3
1,070,355 - +0.0
1,070,359 + -0.9
1,070,359 - -0.0
1,070,369 + +0.6
1,070,374 + -0.8
1,070,457 - -0.3
1,070,485 + +0.7
1,070,486 + +0.2
1,070,495 - -0.5
1,070,500 - -0.9
1,070,502 + +0.3
1,070,504 + +0.1
1,070,520 + +0.3
1,070,599 + +0.1
1,070,614 - -1.2
1,070,616 + +1.0
1,070,617 + +0.4
1,070,632 - -0.4
1,070,632 + -0.2
1,070,633 - +1.2
1,070,635 + +0.1
1,070,642 - -0.0
1,070,645 - -1.3
1,070,649 + +0.2
1,070,650 - +0.2
1,070,652 - +0.2
1,070,656 + +0.2
1,070,657 + +0.2
1,070,657 + -0.3
1,070,664 - +0.2
1,070,664 - +1.1
1,070,665 + -1.1
1,070,682 - -0.1
1,070,690 + +0.1
1,070,702 - +0.3
1,070,704 + -1.0
1,070,707 - -0.1
1,070,711 - -0.6
1,070,720 + +0.7
1,070,732 - -0.6
1,070,739 - -0.2
1,070,744 - +0.1
1,070,777 + +0.0
1,070,787 + -0.6
1,070,794 + +0.6
1,070,810 + +0.7
1,070,813 + +0.2
1,070,816 + -0.0
1,070,816 - -0.1
1,070,819 + +0.3
1,070,909 + -0.2
1,070,948 - +0.7
1,070,957 + +0.1
1,071,966 - -0.4
1,072,014 - +1.5
1,072,103 + -0.2
1,072,146 + -0.4
1,072,695 - 13180 mRNA_4812 0.36 -0.3
1,072,747 + 13180 mRNA_4812 0.41 +0.8

Or see this region's nucleotide sequence