Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4834

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13201 and 13202 are separated by 295 nucleotides13202 and 13203 are separated by 934 nucleotides mRNA_4833: 13201 - K05755 ARPC4 actin related protein 2/3 complex, subunit 4, at 1,110,819 to 1,111,714 13201 mRNA_4834: 13202 - K02996 RP-S9, MRPS9, rpsI small subunit ribosomal protein S9, at 1,112,010 to 1,113,278 13202 mRNA_4835: 13203 - KOG0490 Transcription factor, contains HOX domain, at 1,114,213 to 1,116,199 13203

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,111,855 - -0.3
1,113,313 - -0.3
1,113,313 - -0.1
1,113,326 - -2.4
1,113,326 + +0.6
1,113,331 + -0.9
1,113,338 - +0.1
1,113,349 + -1.1
1,113,358 - -1.6
1,113,359 + -1.2
1,113,360 + +1.5
1,113,360 + -0.1
1,113,360 + -0.1
1,113,363 + -0.3
1,113,364 + +1.0
1,113,365 + -0.3
1,113,466 - -1.2
1,113,467 + -0.5
1,113,482 + -0.0
1,113,483 - +0.5
1,113,486 - -2.7
1,113,490 - +0.2
1,113,500 + +1.2
1,113,501 + +0.1
1,113,502 - -0.0
1,113,513 + -1.1
1,113,519 + -0.6
1,113,523 + -0.3
1,113,524 + +0.3
1,113,534 - +0.8
1,113,563 + +0.1
1,113,639 - -0.2
1,113,647 - -0.5
1,113,650 + -0.5
1,113,652 + +0.0
1,113,653 + -0.6
1,113,673 - -1.0
1,113,680 + -0.1
1,113,684 - +0.6
1,113,684 + -0.9
1,113,685 + +0.1
1,113,685 + -0.0
1,113,687 + -0.1
1,113,694 - +0.1
1,113,697 + +0.4
1,113,702 - -0.7
1,113,830 - +0.5
1,113,838 + -1.2
1,113,844 - +0.0
1,113,848 + -0.6
1,113,854 + -0.0
1,113,861 + -0.4
1,113,874 + +1.4
1,113,874 - +0.5
1,113,890 + +1.2
1,113,891 + -0.6
1,114,011 + -0.4
1,114,019 - +1.3
1,114,021 + +0.5
1,114,036 - -0.4
1,114,054 + +0.4
1,114,144 - +0.6
1,114,182 + +0.2

Or see this region's nucleotide sequence