Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4844

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13211 and 13212 are separated by 567 nucleotides13212 and 13213 are separated by 443 nucleotides mRNA_4843: 13211 - K14842 NSA2 ribosome biogenesis protein NSA2, at 1,126,648 to 1,127,896 13211 mRNA_4844: 13212 - Hypothetical Protein, at 1,128,464 to 1,129,999 13212 mRNA_4845: 13213 - Hypothetical Protein, at 1,130,443 to 1,131,980 13213

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,127,958 + +0.4
1,128,525 + -0.6
1,128,690 - 13212 mRNA_4844 0.15 -0.5
1,129,110 - 13212 mRNA_4844 0.42 +0.6
1,129,128 - 13212 mRNA_4844 0.43 -0.8
1,129,272 - 13212 mRNA_4844 0.53 -0.5
1,129,418 + 13212 mRNA_4844 0.62 +0.3
1,129,597 - 13212 mRNA_4844 0.74 +2.3
1,129,704 + 13212 mRNA_4844 0.81 +0.6
1,130,012 - +1.0
1,130,012 + +2.5
1,130,103 + -1.2
1,130,169 - +0.3
1,130,293 - -0.0
1,130,309 - -0.1
1,130,314 + -1.0
1,130,442 - +0.3
1,130,449 - +0.4
1,130,451 - +0.5
1,130,469 + -1.3
1,130,588 + +0.8
1,130,620 + 13213 mRNA_4845 0.12 -1.3
1,130,738 - 13213 mRNA_4845 0.19 -1.0
1,130,745 + 13213 mRNA_4845 0.20 +0.4
1,130,967 - 13213 mRNA_4845 0.34 -0.2
1,130,975 - 13213 mRNA_4845 0.35 +0.4

Or see this region's nucleotide sequence