Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4867

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13234 and 13235 are separated by 98 nucleotides13235 and 13236 are separated by 220 nucleotides mRNA_4866: 13234 - KOG2881 Predicted membrane protein, at 1,176,473 to 1,177,592 13234 mRNA_4867: 13235 - K06634 CCNH cyclin H, at 1,177,691 to 1,179,183 13235 mRNA_4868: 13236 - HMMPfam-DASH complex subunit Dad1-PF08649, at 1,179,404 to 1,180,039 13236

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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1,177,036 + 13234 mRNA_4866 0.50 +0.9
1,177,339 + 13234 mRNA_4866 0.77 +1.1
1,177,499 - -2.3
1,177,630 + -1.0
1,177,737 - +0.2
1,179,240 + -0.3
1,179,849 + 13236 mRNA_4868 0.70 +0.0
1,179,989 + +1.0
1,180,123 - -0.4

Or see this region's nucleotide sequence