Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4890

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13257 and 13258 are separated by 347 nucleotides mRNA_4889: 13257 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,227,423 to 1,230,111 13257 mRNA_4890: 13258 - HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322, at 1,230,459 to 1,234,781 13258

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
1,229,471 - 13257 mRNA_4889 0.76 +1.5
1,229,970 - +0.3
1,230,018 - -1.6
1,230,157 - +0.2
1,230,160 - -1.2
1,230,168 + +0.5
1,230,168 + -2.2
1,230,187 + -1.8
1,230,190 - +0.7
1,230,462 - -0.2
1,230,641 - -0.2
1,230,655 + -0.0
1,234,910 - -0.4
1,235,187 - -0.3
1,235,203 - -0.2
1,235,223 + -0.4
1,235,350 + -2.3
1,235,356 + +0.7
1,235,366 + +0.2
1,235,367 + -1.0
1,235,374 + +0.3
1,235,376 + -2.0
1,235,468 - -0.9
1,235,518 + +0.8
1,235,677 + +0.2

Or see this region's nucleotide sequence